zamushwani

Query Tcga — Data skill for Claude Code

Data community

Query TCGA/GDC for projects, mutations, or clinical data.

How to install Query Tcga

Installs to ~/.claude/commands/zamushwani-biomedical-ai-skills-query-tcga.md

Terminal

mkdir -p ~/.claude/commands && curl -fsSL https://raw.githubusercontent.com/zamushwani/biomedical-ai-skills/HEAD/.claude/commands/query-tcga.md -o ~/.claude/commands/zamushwani-biomedical-ai-skills-query-tcga.md

Restart Claude Code, or start a new session, for it to be picked up.

What Query Tcga does

description: Query TCGA/GDC for projects, mutations, or clinical data. Use when the user asks for TCGA cohorts, mutation counts, or clinical variables from the Genomic Data Commons. argument-hint: [project-id] [gene] allowed-tools: Read Grep Glob Bash(python3 ) Bash(curl )

Query the GDC for project `$0`, gene `$1`.

Follow the `biomedical-mcp` skill. Call the **GDC REST API** directly (`https://api.gdc.cancer.gov`) rather than wrapping TCGAbiolinks, which is R and calls the same API u

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