zamushwani

Deconvolve Immune — Development skill for Claude Code

Development community

Estimate immune cell composition from bulk RNA-seq.

How to install Deconvolve Immune

Installs to ~/.claude/commands/zamushwani-biomedical-ai-skills-deconvolve-immune.md

Terminal

mkdir -p ~/.claude/commands && curl -fsSL https://raw.githubusercontent.com/zamushwani/biomedical-ai-skills/HEAD/.claude/commands/deconvolve-immune.md -o ~/.claude/commands/zamushwani-biomedical-ai-skills-deconvolve-immune.md

Restart Claude Code, or start a new session, for it to be picked up.

What Deconvolve Immune does

description: Estimate immune cell composition from bulk RNA-seq. Use when the user asks about tumour microenvironment, immune infiltration, CIBERSORT/quanTIseq/xCell, or immune cell fractions. argument-hint: [expression-file] [method] allowed-tools: Read Grep Glob Bash(Rscript *)

Estimate immune composition for `$0` using method `$1` (default: quanTIseq).

Follow the `immune-deconvolution` skill. The parts that are usually got wrong:

Method dictates the input scale. quanTIseq an

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