zamushwani

Analyze Spatial

Name: Analyze Spatial
Author: zamushwani

Data community

SOURCE https://github.com/zamushwani/biomedical-ai-skills/blob/main/.claude/commands/analyze-spatial.md

Description

--- description: Spatial transcriptomics analysis: loading, spatial QC, spatially variable genes, deconvolution, domains. Use for Visium, Xenium, MERSCOPE, or CosMx data. argument-hint: [data-path] [platform] allowed-tools: Read Grep Glob Bash(python3 *) --- Analyse the spatial data at `$0` from platform `$1`. Follow the `spatial-transcriptomics` skill. Platform determines almost everything: ``` Visium spots, not cells. Each spot is a mixture -> deconvolution required. Visium HD 2u

Installation

Installs to ~/.claude/commands/zamushwani-biomedical-ai-skills-analyze-spatial.md

Terminal

mkdir -p ~/.claude/commands && curl -fsSL https://raw.githubusercontent.com/zamushwani/biomedical-ai-skills/HEAD/.claude/commands/analyze-spatial.md -o ~/.claude/commands/zamushwani-biomedical-ai-skills-analyze-spatial.md

Restart Claude Code, or start a new session, for it to be picked up.