Analyze Degs
Description
--- description: Differential expression from a count matrix with DESeq2. Use when the user has bulk RNA-seq counts and wants DEGs, a volcano plot, or asks which genes differ between conditions. argument-hint: [counts-file] [condition-column] allowed-tools: Read Grep Glob Bash(Rscript *) --- Run a differential expression analysis on `$0` using the condition column `$1`. Follow the `cancer-multiomics` skill. The parts that are usually got wrong: 1. **Feed DESeq2 raw integer counts.** Not TPM,
Installation
Installs to ~/.claude/commands/zamushwani-biomedical-ai-skills-analyze-degs.md
mkdir -p ~/.claude/commands && curl -fsSL https://raw.githubusercontent.com/zamushwani/biomedical-ai-skills/HEAD/.claude/commands/analyze-degs.md -o ~/.claude/commands/zamushwani-biomedical-ai-skills-analyze-degs.md Restart Claude Code, or start a new session, for it to be picked up.
Full documentation available on GitHub
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