YuliaNuzhnenko

Alphafold Pocket — Development skill for Claude Code

Development community

Agent Skill: AlphaFold 3D Pocket Evaluator.

How to install Alphafold Pocket

Installs to ~/.claude/skills/yulianuzhnenko-bioinformatics-agent-skills-alphafold_pocket/SKILL.md

Terminal

mkdir -p ~/.claude/skills/yulianuzhnenko-bioinformatics-agent-skills-alphafold_pocket && curl -fsSL https://raw.githubusercontent.com/YuliaNuzhnenko/bioinformatics-agent-skills/HEAD/skills/alphafold_pocket.md -o ~/.claude/skills/yulianuzhnenko-bioinformatics-agent-skills-alphafold_pocket/SKILL.md

Restart Claude Code, or start a new session, for it to be picked up.

What Alphafold Pocket does

Agent Skill: AlphaFold 3D Pocket Evaluator

name: alphafold-pocket-evaluator
version: 1.0.0
domain: Structural Biology & Drug Discovery

Agent Protocol

When evaluating protein structures:

Fetch 3D PDB coordinates from AlphaFold DB using UniProt Accession.
Parse B-factor column to extract per-residue pLDDT confidence scores.
Calculate Solvent Accessible Surface Area (SASA) of active site residues.

Alternatives in Development

Cc Pocket — Drive Claude Code or OpenAI Codex from your phone — resume sessions, stream output, approve tool permissions r 101 ★
Adversarial Dev — GAN-inspired three-agent harness that pits a generator against an adversarial evaluator to build applications 97 ★
Gan Build — Run a generator/evaluator build loop for implementation tasks with bounded iterations and scoring 88 ★