RyanWangZf

BioDSA — AI skill for Claude Code

AI community

BioDSA: Framework for Vibe Prototyping of AI Agents for Biomedicine.

How to install BioDSA

This entry records only its repository, not the path inside it, so there is no exact command to give. Open RyanWangZf/BioDSA and copy the folder into ~/.claude/skills/, or the file into ~/.claude/agents/.

What BioDSA does

BioDSA: Framework for Vibe Prototyping of AI Agents for Biomedicine.

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README

BioDSA: Vibe-Prototype AI Agents for Biomedicine

**BioDSA** is an open-source framework for rapidly prototyping, optimizing, and benchmarking AI agents for biomedical tasks — from data analysis and literature research to clinical trial matching and drug discovery.

Describe what you want in natural language. Get a working agent in minutes.

Motivation

Building AI agents for biomedicine is hard. A typical agent needs LLM orchestration, access to domain-specific knowledge bases (PubMed, ChEMBL, ClinicalTrials.gov, ...), safe code execution, multi-step reasoning, and structured output — all wired together correctly. Starting from scratch every time is slow and error-prone.

**BioDSA solves this by providing:**

A BaseAgent foundation with built-in LLM support (OpenAI, Anthropic, Azure, Google), Docker-sandboxed code execution, and retry handling — so you focus on the agent logic, not the plumbing
LangGraph workflows for composing agent logic as state graphs with conditional edges — supporting ReAct loops, multi-stage pipelines, and multi-agent orchestration
**17+ biomedical knowledge base integrat