nygenome

Probe Concordance — Development skill for Claude Code

Development community

/probe-concordance — Step 1 of probe tracking: truth concordance.

How to install Probe Concordance

Installs to ~/.claude/commands/nygenome-lancet2-probe-concordance.md

Terminal

mkdir -p ~/.claude/commands && curl -fsSL https://raw.githubusercontent.com/nygenome/Lancet2/HEAD/.claude/commands/probe-concordance.md -o ~/.claude/commands/nygenome-lancet2-probe-concordance.md

Restart Claude Code, or start a new session, for it to be picked up.

What Probe Concordance does

/probe-concordance — Step 1 of probe tracking: truth concordance

Run `scripts/truth_concordance.py` to compare a truth VCF against a Lancet2 output VCF, classify every truth variant by match level, and produce the inputs that step 2 (`/probe-run`) and step 3 (`/probe-analyze`) consume.

This is one of three composable commands for the probe tracking workflow. The full workflow is `/probe-concordance` → `/probe-run` → `/probe-analyze`. Each command can also stand alone if its inputs already ex

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