Probe Concordance
Description
# /probe-concordance — Step 1 of probe tracking: truth concordance Run `scripts/truth_concordance.py` to compare a truth VCF against a Lancet2 output VCF, classify every truth variant by match level, and produce the inputs that step 2 (`/probe-run`) and step 3 (`/probe-analyze`) consume. This is one of three composable commands for the probe tracking workflow. The full workflow is `/probe-concordance` → `/probe-run` → `/probe-analyze`. Each command can also stand alone if its inputs already ex
Installation
Installs to ~/.claude/commands/nygenome-lancet2-probe-concordance.md
mkdir -p ~/.claude/commands && curl -fsSL https://raw.githubusercontent.com/nygenome/Lancet2/HEAD/.claude/commands/probe-concordance.md -o ~/.claude/commands/nygenome-lancet2-probe-concordance.md Restart Claude Code, or start a new session, for it to be picked up.
Full documentation available on GitHub
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