Bio Pathway Bot Main — Data skill for Claude Code
Engineered a Python-based RAG AI agent linking Claude AI to the Reactome database via the MCP framework, eliminating AI hallucinations by retrieving verified biological pathways and molecular data in.
How to install Bio Pathway Bot Main
This entry records only its repository, not the path inside it, so there is no
exact command to give. Open DivyaPratap-2023EC001/Bio-Pathway-Bot-Main and copy the folder into
~/.claude/skills/, or the file into ~/.claude/agents/.
What Bio Pathway Bot Main does
Engineered a Python-based RAG AI agent linking Claude AI to the Reactome database via the MCP framework, eliminating AI hallucinations by retrieving verified biological pathways and molecular data in real time.
Alternatives in Data
- Private GPT — Complete API layer for private AI applications on local models: RAG, skills, tools, MCP, text-to-sql, and more 57.5k ★
- OpenViking — Self-evolving Context Database for AI Agents 33.3k ★
- Molecular Dynamics — Molecular dynamics simulation and analysis 6.4k ★
README
Bio-Pathway-Bot
🧬 Project Overview
**The Problem:** AI models often provide inaccurate or "hallucinated" data when discussing complex biological signaling.
**The Solution:** A "Source of Truth" bridge that grounds AI responses in the **Reactome Database**.
**The Technical Execution:**
- Retrieval: Real-time data fetching using the Reactome REST API.
- Augmentation: Python logic to filter and rank the Top 3 most relevant results.
- Generation: Seamless integration with Claude AI via the MCP Framework.
Related Skills
G CLI Agent ClinicalTrialMatching
🧬 Agentic Clinical Trial Match — An AI MVP bridging legacy health data & research protocols. Uses LangGraph f
Fal AI Model Database
🚀 Complete database of 1,094 fal.ai models with pricing, categories & API docs. Includes Python crawler, MCP
Sitrep
Dispatch a subagent (model: sonnet) to generate the daily intelligence brief. The subagent absorbs all MCP too
Pgai Patient Voice Bot
Voice bot that phones an AI receptionist and role-plays patients to find bugs. Python + LiveKit Agents in pipe
Pipeworx
Live data gateway for AI — 4,600+ tools across 1,100+ verified sources, one MCP connection, with citations.
Redis MCP Server
A Redis MCP server (pushed to https://github.com/modelcontextprotocol/servers/tree/main/src/redis) implementat
Related Agents
Icu Pathophysiology Basic
Use when an ICU clinical consult needs the animal-model and basic-science layer — the view of a bench scientis
Keyword Strategist
Génère des descriptions de repo et une bio riches en mots-clés réels pour la findability d'un profil GitHub, e
RAG Coder
Context-aware coder that grounds all code generation in actual codebase using RAG to eliminate hallucinations