ammawla

Download Encode — Development skill for Claude Code

Development community

Download ENCODE files (BED, FASTQ, BAM, bigWig) with MD5 verification.

How to install Download Encode

Installs to ~/.claude/skills/ammawla-encode-toolkit-download-encode/SKILL.md

Terminal

mkdir -p ~/.claude/skills/ammawla-encode-toolkit-download-encode && curl -fsSL https://raw.githubusercontent.com/ammawla/encode-toolkit/HEAD/commands/download-encode.md -o ~/.claude/skills/ammawla-encode-toolkit-download-encode/SKILL.md

Restart Claude Code, or start a new session, for it to be picked up.

What Download Encode does

name: download-encode description: Download ENCODE files (BED, FASTQ, BAM, bigWig) with MD5 verification

Download ENCODE data files to a local directory.

Use `encode_batch_download` with `dry_run=True` first to preview files. Then set `dry_run=False` to download. For specific files, use `encode_download_files` with file accessions. Always verify MD5 checksums.

Refer to the download-encode skill for detailed guidance.

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