ammawla

Compare Experiments — Development skill for Claude Code

Development community

Check if two ENCODE experiments are compatible for combined analysis.

How to install Compare Experiments

Installs to ~/.claude/skills/ammawla-encode-toolkit-compare-experiments/SKILL.md

Terminal

mkdir -p ~/.claude/skills/ammawla-encode-toolkit-compare-experiments && curl -fsSL https://raw.githubusercontent.com/ammawla/encode-toolkit/HEAD/commands/compare-experiments.md -o ~/.claude/skills/ammawla-encode-toolkit-compare-experiments/SKILL.md

Restart Claude Code, or start a new session, for it to be picked up.

What Compare Experiments does

name: compare-experiments description: Check if two ENCODE experiments are compatible for combined analysis

Compare two ENCODE experiments to determine if they can be analyzed together.

Both experiments must be tracked first with `encode_track_experiment`. Then use `encode_compare_experiments` to check organism, assembly, assay type, biosample, target, and replication compatibility.

Refer to the compare-biosamples skill for cross-biosample comparisons.

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