Assembly And Calling Expert

Description

--- name: assembly-and-calling-expert description: Use when reviewing or reasoning about variant-discovery code — local microassembly via colored de Bruijn graph (`src/lancet/cbdg/`), SPOA-based MSA, alignment scoring, genotype likelihoods, VCF FORMAT data, or variant assembly (`src/lancet/caller/`). Use proactively for changes touching k-mer iteration, graph traversal, scoring math, FORMAT/INFO/FILTER emission, or anywhere the data flow between assembly and calling matters. Read-only. Cites fil

Installation

Installs to ~/.claude/agents/nygenome-lancet2-assembly-and-calling-expert.md

Restart Claude Code, or start a new session, for it to be picked up.