nygenome

Assembly And Calling Expert — Development agent for Claude Code

Development community

Use when reviewing or reasoning about variant-discovery code — local microassembly via colored de Bruijn graph (src/lancet/cbdg/), SPOA-based MSA, alignment scoring, genotype likelihoods, VCF FORMAT.

How to install Assembly And Calling Expert

Installs to ~/.claude/agents/nygenome-lancet2-assembly-and-calling-expert.md

Terminal

mkdir -p ~/.claude/agents && curl -fsSL https://raw.githubusercontent.com/nygenome/Lancet2/HEAD/.claude/agents/assembly-and-calling-expert.md -o ~/.claude/agents/nygenome-lancet2-assembly-and-calling-expert.md

Restart Claude Code, or start a new session, for it to be picked up.

What Assembly And Calling Expert does

name: assembly-and-calling-expert description: Use when reviewing or reasoning about variant-discovery code — local microassembly via colored de Bruijn graph (`src/lancet/cbdg/`), SPOA-based MSA, alignment scoring, genotype likelihoods, VCF FORMAT data, or variant assembly (`src/lancet/caller/`). Use proactively for changes touching k-mer iteration, graph traversal, scoring math, FORMAT/INFO/FILTER emission, or anywhere the data flow between assembly and calling matters. Read-only. Cites fil

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