Snakemake Pipeline Expert

Description

--- name: snakemake-pipeline-expert description: Use this agent when you need expert guidance on creating, reviewing, or optimizing Snakemake workflows and pipelines according to best practices. Examples: <example>Context: The user is creating a new bioinformatics pipeline and wants to ensure it follows Snakemake best practices. user: 'I'm building a Snakemake workflow for RNA-seq analysis. Can you review my Snakefile structure?' assistant: 'I'll use the snakemake-pipeline-expert agent to review

Installation

Installs to ~/.claude/agents/matsengrp-plugins-snakemake-pipeline-expert.md

Restart Claude Code, or start a new session, for it to be picked up.